If you love breakfast sandwiches but want something that’s both fun to eat and perfect for busy mornings, you are going to adore this Freezer-Friendly Ham, Egg, and Cheese Bagel Bombs Recipe. These little pockets of gooey cheese, savory ham, and fluffy scrambled eggs wrapped in soft bagel dough are nothing short of magical. Plus, since they freeze beautifully, you can make a batch ahead of time and enjoy a warm, satisfying breakfast or snack anytime you want with almost zero effort. Trust me, once you try these, they’ll quickly become a household favorite for brunch, school lunches, or quick meals on the go.

Ingredients You’ll Need
The ingredients for these bagel bombs are straightforward but mighty important. Each element lends flavor, texture, or that irresistible bagel charm that pulls everything together perfectly. You’ll want fresh and good quality for the best results!
- Refrigerated Pizza Dough: This acts as the bagel’s chewy, dense outer shell; you can also use homemade dough if you prefer.
- Whole Eggs: The key to fluffy scrambled filling; feel free to swap with egg whites for a lighter option.
- Diced Ham: Adds a delightful savory bite; you can substitute with turkey or chicken for a leaner twist.
- Shredded Cheese (Allegro or similar): Melts beautifully inside, providing that creamy, comforting texture—mozzarella and cheddar work wonderfully too.
- Salt and Pepper: Essentials for seasoning the eggs just right.
- Bagel Seasoning: This adds that typical bagel crunch and flavor—make your own with poppy seeds, sesame seeds, and garlic powder if you’re feeling adventurous.
- Honey (optional): A splash goes into the boiling water to give the bagels a lovely shine and slight sweetness.
How to Make Freezer-Friendly Ham, Egg, and Cheese Bagel Bombs Recipe
Step 1: Prepare the Dough
Start by thawing your refrigerated pizza dough so it’s soft and pliable. Divide the dough into 8 equal parts and roll each one into a smooth ball. Cover them with a clean kitchen towel and let them rest for 20 minutes. This resting time helps the dough rise slightly, resulting in a wonderfully fluffy bagel texture once baked. It’s a simple step but crucial for that perfect chew!
Step 2: Make the Scrambled Egg Filling
While your dough is resting, whisk together the eggs with a pinch of salt and pepper. Gently scramble them in a non-stick pan over medium heat until they’re just cooked through but still soft and fluffy. This tender scrambled egg is the star filling and pairs beautifully with ham and cheese, so avoid overcooking here. Set the eggs aside to cool slightly—it’s easier to work with when not piping hot.
Step 3: Boil with a Touch of Honey
Bring a large pot of water to a boil and add a tablespoon of honey. This little trick not only adds a subtle sweetness but also helps give the bagel bombs a shiny, golden crust once baked. Honey in boiling water might sound unusual, but it’s an old bakery secret that really elevates the final product.
Step 4: Assemble the Bagel Bombs
Flatten each dough ball into a circle about 4 to 5 inches wide. Spoon some scrambled eggs, diced ham, and shredded cheese right in the center, making sure not to overfill. Carefully fold and pinch the dough edges together, sealing your savory bundle tightly so nothing escapes during cooking. The care you take here will pay off with perfectly round, filled bagels every time.
Step 5: Poach the Bagel Bombs
Gently drop each filled dough ball into the boiling honey water for 30 seconds up to 1 minute. This poaching step is what gives the dough a classic bagel texture by setting the outer layer before baking. Use a slotted spoon to remove them once they float to the top and let them drain briefly on a baking sheet lined with parchment paper.
Step 6: Add Seasoning and Bake
Sprinkle each bagel bomb generously with your bagel seasoning—this adds that iconic poppy-sesame-garlic crunch and flavor burst. Bake in a preheated oven at 425°F for 20 minutes or until they’ve puffed up and turned a gorgeous golden brown. The aroma alone will have you counting down the minutes!
Step 7: Cool and Prepare for Freezing
Allow the bagel bombs to cool completely on a wire rack. Once cooled, wrap each one individually in plastic wrap or place them in a labeled freezer-safe bag. This keeps them fresh and stackable in the freezer, ready to enjoy when you want them without any fuss.
How to Serve Freezer-Friendly Ham, Egg, and Cheese Bagel Bombs Recipe

Garnishes
A simple spread of cream cheese or a tiny dab of butter after warming can elevate these bagel bombs to a whole new level. Herb-infused cream cheese or a smear of spicy mustard adds extra zing. If you’re feeling fresh, chopped chives or a sprinkle of everything bagel seasoning on top just before serving can amp up flavor and visual appeal.
Side Dishes
Because these bagel bombs are already packed with protein and cheese, I like pairing them with bright, fresh sides like a crisp green salad, fresh fruit slices, or some lightly dressed roasted veggies. If serving for brunch, crispy hash browns or a fresh fruit salad with a drizzle of honey complement perfectly without overwhelming your plate.
Creative Ways to Present
For a party or brunch spread, slice these bagel bombs in half and arrange them on a platter with a variety of dipping sauces—think spicy sriracha mayo, classic ketchup, or a zesty ranch dip. Another fun idea is to serve them up alongside mini bagels or croissants for a mix-and-match breakfast buffet that delights everyone.
Make Ahead and Storage
Storing Leftovers
If you happen to have leftovers, or made an extra batch, store individual bagel bombs in airtight containers in the refrigerator for up to 3 days. This keeps them fresh, and you can quickly reheat them each morning for a hot breakfast without starting from scratch.
Freezing
This Freezer-Friendly Ham, Egg, and Cheese Bagel Bombs Recipe truly shines because it freezes so well. Wrapped individually in plastic wrap and placed in a freezer-safe bag, they stay fresh for up to 3 months. Having these ready in your freezer means no more morning rushing—just pop one in the oven straight from frozen for a few minutes and enjoy.
Reheating
To reheat, remove the plastic wrap and place the frozen bagel bombs on a baking sheet. Bake at 350°F for about 15 to 20 minutes or until heated through and crisp on the outside. For a quicker option, microwaving for 1 to 2 minutes works in a pinch, but the oven reheating preserves that perfect bagel texture the best.
FAQs
Can I use a different type of cheese?
Absolutely! While shredded Allegro cheese blends nicely, feel free to experiment with cheddar, mozzarella, pepper jack, or even smoked gouda. Just pick a cheese that melts well to keep the filling wonderfully gooey.
What if I am allergic to eggs?
You can substitute the scrambled eggs with a tofu scramble or even mashed seasoned chickpeas for a delicious vegan-friendly filling. Adjust seasoning to keep plenty of flavor in each bite.
Can I make these bagel bombs gluten-free?
Yes, swap out the pizza dough for gluten-free pizza dough available at many stores or use a homemade gluten-free bagel dough recipe. Keep in mind texture might differ slightly but will still be delicious.
How long do they last in the fridge?
Once baked and cooled, store them in an airtight container in the refrigerator for up to 3 days. Beyond that, freezing is best to maintain quality and freshness.
Can I add veggies to the filling?
Definitely! Chopped spinach, bell peppers, or sautéed mushrooms are tasty options to sneak in extra veggies without overpowering the classic flavor combination of ham, egg, and cheese.
Final Thoughts
This Freezer-Friendly Ham, Egg, and Cheese Bagel Bombs Recipe has quickly become one of my favorite go-to breakfasts for busy mornings and casual brunches alike. They combine all the comfort of a classic bagel sandwich with effortless make-ahead convenience and freezing power. Whether you’re feeding a crowd or just looking to simplify your mornings, these bagel bombs are pure magic that you will want to make again and again. Give them a try, and I promise they’ll brighten up your breakfast routine in the best way possible!
Print
Freezer-Friendly Ham, Egg, and Cheese Bagel Bombs Recipe
- Prep Time: 30 minutes
- Cook Time: 30 minutes
- Total Time: 1 hour
- Yield: 8 bagel bombs
- Category: Breakfast
- Method: Baking
- Cuisine: American
Description
These Freezer Friendly Ham, Egg, and Cheese Bagel Bombs combine fluffy scrambled eggs, savory ham, and melty cheese wrapped in a soft pizza dough bagel. Boiled briefly for a chewy texture and baked to golden perfection, they make a perfect make-ahead breakfast or snack that can be frozen and enjoyed anytime.
Ingredients
Bagel Dough
- 1 package Refrigerated Pizza Dough (Can also use homemade versions)
Filling
- 8 whole Eggs (Can swap with egg whites for a lighter option)
- 1 cup Diced Ham (Try turkey or chicken for a leaner alternative)
- 1 cup Shredded Allegro Cheese (Any melting cheese like cheddar or mozzarella works)
- Salt, to taste
- Pepper, to taste
Boiling & Topping
- 1 tablespoon Honey (Optional but adds a nice touch)
- Bagel Seasoning, to taste (Make your own mix with poppy seeds, sesame seeds, and garlic powder)
Instructions
- Prepare Dough: Thaw your refrigerated pizza dough and divide it into 8 equal pieces. Roll each piece into a ball, cover with a clean kitchen towel, and let rise for 20 minutes to achieve a fluffy texture.
- Cook Filling: In a mixing bowl, whisk whole eggs with a pinch of salt and pepper. Scramble them gently in a pan over medium heat until fluffy. Set aside to cool slightly.
- Boil Water: In a large pot, bring water to a boil. Add a splash of honey to the boiling water to enhance rise and flavor of the bagel bombs.
- Shape Bagel Bombs: Flatten each dough ball into a circle. Spoon scrambled eggs, diced ham, and shredded cheese into the center, then carefully seal the edges completely to encase the filling.
- Boil Bagel Bombs: Drop each filled bagel bomb into the boiling water for 30 seconds to 1 minute. Remove with a slotted spoon and let drain thoroughly.
- Bake: Place the boiled bagel bombs on a baking sheet lined with parchment paper or a silicone mat. Sprinkle generously with bagel seasoning. Bake in a preheated oven at 425°F (220°C) for 20 minutes, or until golden brown and cooked through.
- Cool and Store: Allow the bagel bombs to cool completely on a wire rack. Wrap each individually in plastic wrap or place them in a freezer-safe bag for freezing to enjoy later.
Notes
- You can substitute the ham with turkey or chicken for a leaner option.
- Use egg whites instead of whole eggs if you want a lighter protein option.
- Try different melting cheeses like cheddar, mozzarella, or a blend for varied flavor profiles.
- Make your own bagel seasoning mix by combining poppy seeds, sesame seeds, and garlic powder.
- Ensure bagel bombs are sealed properly before boiling to prevent filling leakage.
- Freezing the bagel bombs separately with plastic wrap prevents freezer burn and allows easy reheating.

